.. Blacktie: a python RNA-seq pipeline for tophat/cufflinks documentation master file, created by
    sphinx-quickstart on Mon Feb 25 07:48:21 2013.
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.

Welcome to Blacktie's documentation! 
====================================

Contents:

.. toctree::
    :maxdepth: 3

    project
    install
    tutorial
    code



Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`